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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31768432_31770128_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31768432 - 31770128
Intron Length:
1697

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTCATA
5'SS Class:
major
3'SS Sequence:
TTTCTTTGGACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTACAT
U12 Branch Point Sequence:
TTTGTTTTACAT
Flanking Amino Acid:
MRQEEETSEQDPNLKDQGNQ
Intron Amino Acid Position:
1126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.2
0.52
1.1
71
40.8
Major BPS
82.7
0.81
0.9
89.3
26.1
Major PPT
77.3
0.61
1
75.8
38.2
Minor 5ss
42
-0.9
3.1
57.8
46.3
Minor BPS
54.2
0.21
1.8
75.95
41.3

Associated Gene:

Gene:
SCAF11
Ensembl Gene ID:
ENSAPLG00000010483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030720
31763980 - 31794483
30504
ENSAPLT00000010922
31764605 - 31808029
43425