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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31776814_31778042_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31776814 - 31778042
Intron Length:
1229

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACAAATT
5'SS Class:
major
3'SS Sequence:
TTTTATTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATGATTTTATTT
Flanking Amino Acid:
SCSSVLARVERIPLMSYGAE
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1
78.1
36.3
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
92
0.95
0.7
84.8
35.4
Minor 5ss
37.7
-1.4
3.4
57.7
46.5
Minor BPS
50.5
0.09
1.6
65.97
39.6

Associated Gene:

Gene:
SCAF11
Ensembl Gene ID:
ENSAPLG00000010483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030720
31763980 - 31794483
30504
ENSAPLT00000010922
31764605 - 31808029
43425