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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31778133_31779047_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31778133 - 31779047
Intron Length:
915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTTAGTTTA
5'SS Class:
major
3'SS Sequence:
ACTTGTATTTTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
GTTATTTTAAAT
Flanking Amino Acid:
EESFLSCRNDCTELTEVNAV
Intron Amino Acid Position:
207

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1.1
77.9
32.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
73.9
0.54
0.9
70.8
39.2
Minor 5ss
40.3
-1.1
2.7
48
42
Minor BPS
64.9
0.55
1.4
78.42
37.5

Associated Gene:

Gene:
SCAF11
Ensembl Gene ID:
ENSAPLG00000010483
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030720
31763980 - 31794483
30504
ENSAPLT00000010922
31764605 - 31808029
43425