Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31793526_31794371_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

31793526 - 31794371

Intron Length:

846

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAAAGTCT

5'SS Class:

strong_major

3'SS Sequence:

TTCATAATACCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTCTAAA

U12 Branch Point Sequence:

ATGTTCATAATA

Flanking Amino Acid:

TEGQKHEGMEGEEKEESCSC

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.5

0.74

75.5

34.8

Major BPS

85.3

0.88

0.8

84.2

21.8

Major PPT

68.2

0.41

60.4

43.7

Minor 5ss

38.7

-1.3

3.4

56.7

47.6

Minor BPS

61.5

0.36

1.6

70.15

36.2

Associated Gene:

Gene:

SCAF11

Ensembl Gene ID:

ENSAPLG00000010483

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000030720

31763980 - 31794483

30504

ENSAPLT00000010922

31764605 - 31808029

43425