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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31838852_31839532_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31838852 - 31839532
Intron Length:
681

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTGTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTTTCTTCCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAT
U12 Branch Point Sequence:
AGTTCATTAATT
Flanking Amino Acid:
DGSKLTQRIWASLFLALGIM
Intron Amino Acid Position:
457

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1
77.9
36.9
Major BPS
79.4
0.73
0.9
79.6
29.1
Major PPT
91.8
0.94
0.6
84.6
30.3
Minor 5ss
44.3
-0.6
3.2
57.9
46.7
Minor BPS
72.3
0.78
1.5
84.81
35.1

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796