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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31839631_31839736_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31839631 - 31839736
Intron Length:
106

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTACAGTGT
5'SS Class:
major
3'SS Sequence:
TTCAATTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACTCAT
U12 Branch Point Sequence:
TTCGTTTCAATT
Flanking Amino Acid:
PTMKDIFGVVGVTSANMLIF
Intron Amino Acid Position:
424

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.1
0.5
1.1
63.9
42.9
Major BPS
78.3
0.7
0.8
77.7
26.1
Major PPT
82.3
0.73
0.9
76.6
37
Minor 5ss
36.7
-1.5
3.6
56
48.2
Minor BPS
54
0.2
1.6
70.72
41.5

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796