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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31839879_31840425_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31839879 - 31840425
Intron Length:
547

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACT|GTAAGTAAA
5'SS Class:
major
3'SS Sequence:
TCTCTTCCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACATCAA
U12 Branch Point Sequence:
TATTCCTGACAT
Flanking Amino Acid:
ILTVPVLFFTVRSSLFELAR
Intron Amino Acid Position:
377

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.6
0.63
1.1
76.6
33.9
Major BPS
57.7
0.19
1.1
60
36
Major PPT
85.8
0.81
0.7
80.2
25.3
Minor 5ss
38
-1.4
2.8
52.2
44.4
Minor BPS
59
0.36
1.9
79.84
41.4

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796