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Intron Name: Anas_platyrhynchos_platyrhynchos_1_3184362_3187551_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3184362 - 3187551

Intron Length:

3190

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCTCTTTGGGCAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTGAC

U12 Branch Point Sequence:

GTCTTTTTGACT

Flanking Amino Acid:

CGTPDYIAPEILLGQKYNTS

Intron Amino Acid Position:

558

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.6

0.86

0.9

78.9

33.5

Major BPS

86.5

0.91

0.8

77.4

37.4

Major PPT

73.7

0.53

72.2

37.8

Minor 5ss

33.9

-1.8

3.5

49.9

46.5

Minor BPS

69.3

0.69

1.2

78.83

37.8

Associated Gene:

Gene:

PRKCQ

Ensembl Gene ID:

ENSAPLG00000013073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027340

3182797 - 3222953

40157

ENSAPLT00000013668

3182797 - 3238728

55932