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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31845017_31847310_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31845017 - 31847310
Intron Length:
2294

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TCTCTCTGAACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTTAT
U12 Branch Point Sequence:
TTCTTCTTAACT
Flanking Amino Acid:
KPKYVIFNSKTVYALPTIAF
Intron Amino Acid Position:
277

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.6
0.93
0.8
84
28
Major BPS
83.6
0.84
0.8
71.9
35.8
Major PPT
72.4
0.5
1
69.1
35.8
Minor 5ss
53.1
0.1
2.3
69.7
41.2
Minor BPS
87.3
1.25
0.9
95.32
31.5

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796