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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31847437_31847558_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31847437 - 31847558
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
GCTTTTGTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTATTCTTAACA
Flanking Amino Acid:
LSCMVFFLIVVIYKKFQIPC
Intron Amino Acid Position:
235

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.8
82
26.1
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
72.4
0.51
0.9
65.1
41.2
Minor 5ss
39.7
-1.2
2.8
45.9
43.7
Minor BPS
85.8
1.12
0.9
88.03
28.8

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796