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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31849547_31849872_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31849547 - 31849872
Intron Length:
326

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAAGGAG
5'SS Class:
major
3'SS Sequence:
CTTGTTCCACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
GTTGTCTAAAGT
Flanking Amino Acid:
FGSTSLQNVGAMLSYLFIVK
Intron Amino Acid Position:
160

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.1
0.69
1
66.3
39.3
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
74.2
0.54
0.9
67.1
39.2
Minor 5ss
27.9
-2.5
3.5
36.8
47.7
Minor BPS
49.6
0.05
2.1
71.56
45.6

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796