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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31849966_31851565_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31849966 - 31851565
Intron Length:
1600

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATATAA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTAACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
TTTCTTTTAACA
Flanking Amino Acid:
YLLLVCSKETGCMVYEKLGE
Intron Amino Acid Position:
129

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
75.8
29
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
77.7
0.62
0.9
73.4
34.8
Minor 5ss
37.3
-1.4
3
47.4
47.9
Minor BPS
78.7
0.9
1
84.25
28.8

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796