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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31857042_31857515_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31857042 - 31857515
Intron Length:
474

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTCCT
5'SS Class:
strong_major
3'SS Sequence:
TCTATTTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAA
U12 Branch Point Sequence:
CGTTGCTGACCT
Flanking Amino Acid:
HLEKKKCDEYIPGTTSLGMS
Intron Amino Acid Position:
66

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.3
0.79
1
77.4
37.4
Major BPS
59.7
0.24
1.2
52.7
43.2
Major PPT
84.9
0.79
0.8
77.1
37.1
Minor 5ss
39.3
-1.2
3
56.4
40.7
Minor BPS
47.8
-0
2.2
69.32
47.1

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796