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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31857592_31863678_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31857592 - 31863678
Intron Length:
6087

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTGAGTATT
5'SS Class:
strong_major
3'SS Sequence:
TGACTTCTTTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
AATCCTCTGACT
Flanking Amino Acid:
FTEVENGQINSKFISDRESR
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
95.7
1.08
0.6
96
12.4
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
80.3
0.68
0.9
77.3
36.7
Minor 5ss
36.2
-1.6
2.9
50.6
45.9
Minor BPS
55
0.24
1.7
72.89
37.4

Associated Gene:

Gene:
SLC38A1
Ensembl Gene ID:
ENSAPLG00000010056
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010499
31838667 - 31872462
33796