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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3187691_3191198_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
3187691 - 3191198
Intron Length:
3508

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTCCTCCACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTAAAA
U12 Branch Point Sequence:
TCTTCCTCCACA
Flanking Amino Acid:
QFLHSKGIIYRDLKLDNVLL
Intron Amino Acid Position:
511

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
86.5
23.8
Major BPS
73.1
0.58
1
79.6
29.1
Major PPT
81.6
0.71
0.7
76.2
26
Minor 5ss
43.1
-0.8
2.9
58.1
46.5
Minor BPS
61.5
0.36
2
75.44
42.2

Associated Gene:

Gene:
PRKCQ
Ensembl Gene ID:
ENSAPLG00000013073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013668
3182797 - 3238728
55932