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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31892285_31892997_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31892285 - 31892997
Intron Length:
713

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTATGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTATAT
U12 Branch Point Sequence:
GCTTCTTTATAT
Flanking Amino Acid:
EPMKSVQKIGAALFFLSGIV
Intron Amino Acid Position:
470

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.3
0.74
1
79.7
35.3
Major BPS
79.2
0.73
1
75.3
39.4
Major PPT
93.6
0.98
0.6
92.4
17.8
Minor 5ss
45
-0.5
2.5
51.2
45.5
Minor BPS
58.8
0.35
1.7
73.69
43.2

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711