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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31894174_31894468_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31894174 - 31894468
Intron Length:
295

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAATATC
5'SS Class:
strong_major
3'SS Sequence:
GTTTTCTTTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
ATCTAATTAAAA
Flanking Amino Acid:
AALFGYLTFYGNVESELLHT
Intron Amino Acid Position:
347

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
0.9
80.3
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
86.6
0.82
0.7
85.4
29.4
Minor 5ss
39.8
-1.1
2.9
51.1
40
Minor BPS
51.5
0.04
1.9
65.69
39.9

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711