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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31894570_31894670_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31894570 - 31894670
Intron Length:
101

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGCT
5'SS Class:
major
3'SS Sequence:
CTCCTTCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTCAT
U12 Branch Point Sequence:
TCATTGCTAACA
Flanking Amino Acid:
AILPIYEELKGRSRKRMMNV
Intron Amino Acid Position:
313

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
72.1
37.7
Major BPS
82.6
0.81
0.9
83.3
27.7
Major PPT
84.8
0.78
0.7
79.2
26.5
Minor 5ss
34.2
-1.8
3.3
41.8
44.8
Minor BPS
47.8
-0.1
2.3
64.21
42.2

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711