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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31894751_31895197_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31894751 - 31895197
Intron Length:
447

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGAC
5'SS Class:
strong_major
3'SS Sequence:
TTATGTTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
GCTTATTTAATA
Flanking Amino Acid:
KPKYFIFNSQTVYAVPILTF
Intron Amino Acid Position:
287

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
1.1
75.8
34.3
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
85
0.79
0.9
77.1
41.8
Minor 5ss
38.5
-1.3
3.2
52
45.2
Minor BPS
64
0.44
1.5
68.68
38.1

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711