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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31895348_31895465_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31895348 - 31895465
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTT|GTAAGTATA
5'SS Class:
major
3'SS Sequence:
ACTTTATTTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
ATTACTTTATTT
Flanking Amino Acid:
LLCMVFFLIVVIWKMFQIPC
Intron Amino Acid Position:
237

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
81.8
31
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
78.6
0.64
0.8
70.5
39.6
Minor 5ss
41.9
-0.9
2.8
57.3
41.2
Minor BPS
63
0.49
1.6
78.87
37.7

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711