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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31895525_31896457_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
31895525 - 31896457
Intron Length:
933

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTTGATTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TCTTTCTTGATT
Flanking Amino Acid:
ILPLSLLKNLGYLGYTSGFS
Intron Amino Acid Position:
217

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.95
0.9
81.8
38.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.7
0.74
0.9
76.7
36.2
Minor 5ss
41.1
-1
2.9
57.9
46.4
Minor BPS
77
0.93
1.1
86.06
34.4

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711