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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31896541_31899589_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31896541 - 31899589
Intron Length:
3049

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAGGTGTT
5'SS Class:
major
3'SS Sequence:
CTTTTTCCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
AGTTACTTACAA
Flanking Amino Acid:
KTFMNIEENTGEWYLNGDYL
Intron Amino Acid Position:
189

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.9
0.68
1.1
76.2
39.9
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
89.5
0.89
0.6
84.3
23.8
Minor 5ss
36.8
-1.5
3.6
48.8
47.3
Minor BPS
51
0.03
1.9
65.26
40.4

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711