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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31900125_31902910_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
31900125 - 31902910
Intron Length:
2786

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGT|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
TTTCATCCCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTCATCC
Flanking Amino Acid:
AMANTGIALFVILLLFVSIV
Intron Amino Acid Position:
106

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.1
78.2
36.4
Major BPS
100
1.24
0.5
100
0
Major PPT
78.4
0.64
0.8
70.1
36.2
Minor 5ss
42.3
-0.9
2.8
55.7
41.6
Minor BPS
57.9
0.23
1.8
73.82
37.4

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711