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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_31903027_31903149_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
31903027 - 31903149
Intron Length:
123

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAT|GTAAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TCCCTTTTCTCAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TTTCTATTAATT
Flanking Amino Acid:
AGKKKYETQYHPGTTSFGMS
Intron Amino Acid Position:
68

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
1
80.9
31.3
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
84
0.77
0.7
83.1
25.3
Minor 5ss
39.4
-1.2
2.7
51.9
37.5
Minor BPS
69.3
0.68
1.5
86.39
32.9

Associated Gene:

Gene:
SLC38A2
Ensembl Gene ID:
ENSAPLG00000017196
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047701
31888936 - 31903646
14711