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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32022453_32022570_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32022453 - 32022570
Intron Length:
118

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACTAAT
U12 Branch Point Sequence:
CTTTATTTTACA
Flanking Amino Acid:
QPKYFVFNSRTAYAIPILAF
Intron Amino Acid Position:
365

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1
66
40.1
Major BPS
86.7
0.91
0.7
84.2
21.8
Major PPT
89
0.88
0.7
83.5
31.2
Minor 5ss
29.3
-2.4
3.3
30
43
Minor BPS
58.2
0.25
1.8
71.98
40

Associated Gene:

Gene:
SLC38A4
Ensembl Gene ID:
ENSAPLG00000008807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038159
32014972 - 32034820
19849
ENSAPLT00000009191
32015174 - 32034907
19734