Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32022850_32023245_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32022850 - 32023245

Intron Length:

396

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GTG|GTAGGTTAC

5'SS Class:

major

3'SS Sequence:

TACTCTTTTGTAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTCTGAT

U12 Branch Point Sequence:

TTCTGATGACAT

Flanking Amino Acid:

LTCMVFFVSVVIFKKSQIPC

Intron Amino Acid Position:

272

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

78.8

0.68

71.1

35.6

Major BPS

91.3

1.03

0.7

79.6

35.6

Major PPT

81.2

0.7

0.8

31.3

Minor 5ss

39.2

-1.2

3.1

48.3

42.5

Minor BPS

40.9

-0.6

2.3

63.14

46.4

Associated Gene:

Gene:

SLC38A4

Ensembl Gene ID:

ENSAPLG00000008807

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000038159

32014972 - 32034820

19849

ENSAPLT00000009191

32015174 - 32034907

19734