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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32029890_32030462_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32029890 - 32030462
Intron Length:
573

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGCGTT
5'SS Class:
strong_major
3'SS Sequence:
TCTTTTTGTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
GTTTTTGTATTT
Flanking Amino Acid:
LVDSEKAAISSPFASDDAES
Intron Amino Acid Position:
40

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
91.6
0.98
0.8
85.2
32.2
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
88
0.85
0.8
87.9
29.4
Minor 5ss
42.3
-0.9
3.5
64.1
47.4
Minor BPS
47.8
-0
2.2
71.36
40.7

Associated Gene:

Gene:
SLC38A4
Ensembl Gene ID:
ENSAPLG00000008807
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038159
32014972 - 32034820
19849
ENSAPLT00000009191
32015174 - 32034907
19734