Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3207773_3209684_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3207773 - 3209684

Intron Length:

1912

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGTACT

5'SS Class:

strong_major

3'SS Sequence:

TTCTGTAATCCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATAACAT

U12 Branch Point Sequence:

TTTTCTGTAATC

Flanking Amino Acid:

ALAMIESTQQARSQRDTEQI

Intron Amino Acid Position:

301

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

89.9

0.94

0.8

86.2

29.3

Major BPS

62.2

0.3

1.1

69.4

35.8

Major PPT

74.9

0.56

66.8

43.1

Minor 5ss

44.5

-0.6

2.5

60.9

43.5

Minor BPS

67.7

0.53

81.67

33.1

Associated Gene:

Gene:

PRKCQ

Ensembl Gene ID:

ENSAPLG00000013073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027340

3182797 - 3222953

40157

ENSAPLT00000013668

3182797 - 3238728

55932