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Intron Name: Anas_platyrhynchos_platyrhynchos_1_3209795_3210460_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3209795 - 3210460

Intron Length:

666

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTGAGTCCC

5'SS Class:

strong_major

3'SS Sequence:

TTCTTTCTTTCAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCCTGAC

U12 Branch Point Sequence:

TTGTCCTGACAC

Flanking Amino Acid:

GLARQGLKCDACDMNVHHKC

Intron Amino Acid Position:

264

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.7

0.75

0.9

67.6

37.6

Major BPS

68.9

0.47

59.2

39.1

Major PPT

93.2

0.97

0.6

92.2

18.2

Minor 5ss

30.2

-2.3

2.8

Minor BPS

54.1

0.11

1.9

68.62

42.6

Associated Gene:

Gene:

PRKCQ

Ensembl Gene ID:

ENSAPLG00000013073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027340

3182797 - 3222953

40157

ENSAPLT00000013668

3182797 - 3238728

55932