Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3210591_3211635_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3210591 - 3211635

Intron Length:

1045

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTATGTATT

5'SS Class:

strong_major

3'SS Sequence:

TTTTCTGTTACAG|T

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

AAGTGAA

U12 Branch Point Sequence:

TTTTCTGTTACA

Flanking Amino Acid:

GSAVNSRETMFHKERFKIDV

Intron Amino Acid Position:

221

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

0.8

0.9

85.3

31.1

Major BPS

55.5

0.14

1.1

47.1

37.9

Major PPT

88.8

0.87

0.8

83.7

31.3

Minor 5ss

47.9

-0.2

2.5

65.4

40.1

Minor BPS

57.4

0.23

2.3

78.96

37.6

Associated Gene:

Gene:

PRKCQ

Ensembl Gene ID:

ENSAPLG00000013073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027340

3182797 - 3222953

40157

ENSAPLT00000013668

3182797 - 3238728

55932