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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3212579_3214323_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
3212579 - 3214323
Intron Length:
1745

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
GTG|GCAAGTGAA
5'SS Class:
strong_major
3'SS Sequence:
TGCTTCCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAT
U12 Branch Point Sequence:
TGTACCCTAACA
Flanking Amino Acid:
MNARYFLEISDAKDLADCET
Intron Amino Acid Position:
127

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
74.9
38.2
Major BPS
60.7
0.27
1
65.3
28.1
Major PPT
83.9
0.76
0.8
81
31
Minor 5ss
21.8
-3.2
3.8
27.8
37.9
Minor BPS
67.1
0.53
1.7
78.35
37.4

Associated Gene:

Gene:
PRKCQ
Ensembl Gene ID:
ENSAPLG00000013073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027340
3182797 - 3222953
40157
ENSAPLT00000013668
3182797 - 3238728
55932