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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3214385_3216131_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
3214385 - 3216131
Intron Length:
1747

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTC
5'SS Class:
major
3'SS Sequence:
TTATCACAACCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTTTTTTCACT
Flanking Amino Acid:
KKSNGKTEIWLELKPQGRML
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
69.2
38.5
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
64.6
0.33
1
57.3
42.4
Minor 5ss
42.5
-0.8
3
50.6
46.1
Minor BPS
72.2
0.78
1.7
90.89
33.1

Associated Gene:

Gene:
PRKCQ
Ensembl Gene ID:
ENSAPLG00000013073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027340
3182797 - 3222953
40157
ENSAPLT00000013668
3182797 - 3238728
55932