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Intron Name: Anas_platyrhynchos_platyrhynchos_1_3216332_3221543_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

3216332 - 3221543

Intron Length:

5212

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAGTGGG

5'SS Class:

strong_major

3'SS Sequence:

TTCTTGTTGACAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

AGCTAAT

U12 Branch Point Sequence:

TTCTTGTTGACA

Flanking Amino Acid:

AVMVKEAVESENGQVYVQKK

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

93.3

1.02

0.8

76.2

39.9

Major BPS

70.5

0.51

1.1

69.7

35.5

Major PPT

78.6

0.64

75.5

38.4

Minor 5ss

32.1

-2

3.1

40.6

45.6

Minor BPS

58.4

0.26

2.1

73.41

38.9

Associated Gene:

Gene:

PRKCQ

Ensembl Gene ID:

ENSAPLG00000013073

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000027340

3182797 - 3222953

40157

ENSAPLT00000013668

3182797 - 3238728

55932