Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_321998_322214_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

321998 - 322214

Intron Length:

217

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTGTGTGCT

5'SS Class:

strong_major

3'SS Sequence:

TCCTGGCTCCCAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATCTAAC

U12 Branch Point Sequence:

CCAGATCTAACA

Flanking Amino Acid:

SRRRRCCHIQLRPLFLLALA

Intron Amino Acid Position:

199

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

84.1

0.8

0.9

76.6

31.9

Major BPS

75.8

0.64

0.9

75.6

25.3

Major PPT

70.4

0.46

0.9

60.8

40.3

Minor 5ss

-1.6

3.2

49.9

46.5

Minor BPS

43.7

-0.4

1.9

49.22

41.7

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000019328

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046296

320455 - 324861

4407

ENSAPLT00000041134

320455 - 324861

4407

ENSAPLT00000010102

320455 - 325094

4640