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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_3221670_3222803_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
3221670 - 3222803
Intron Length:
1134

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTGACACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTAGAC
U12 Branch Point Sequence:
TTTTGTTTGACA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
69.3
0.48
1.1
66.7
40
Major PPT
73.3
0.53
1
68.9
41.2
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
69.2
0.6
1.7
81.99
33.2

Associated Gene:

Gene:
PRKCQ
Ensembl Gene ID:
ENSAPLG00000013073
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027340
3182797 - 3222953
40157
ENSAPLT00000013668
3182797 - 3238728
55932