About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_322356_322830_F

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
322356 - 322830
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTGGG
5'SS Class:
major
3'SS Sequence:
TTTCCTCTCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GGCTCAG
U12 Branch Point Sequence:
CTGGGCTCAGCA
Flanking Amino Acid:
ACPYGLMLATTFYAVSFLMV
Intron Amino Acid Position:
246

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
63.5
42.9
Major BPS
45.3
-0.3
1.7
51.1
46.3
Major PPT
86.1
0.81
0.7
84.7
23
Minor 5ss
27.1
-2.6
3
31.9
42.5
Minor BPS
41.6
-0.6
2.2
50.89
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019328
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041134
320455 - 324861
4407
ENSAPLT00000031590
320496 - 324861
4366
ENSAPLT00000010102
320455 - 325094
4640
ENSAPLT00000046296
320455 - 324861
4407