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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32385320_32386485_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32385320 - 32386485
Intron Length:
1166

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TGTTAAT
U12 Branch Point Sequence:
TTTTTTTTTACA
Flanking Amino Acid:
VMFMSGSEKKITQVLFSHVK
Intron Amino Acid Position:
641

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.1
0.87
0.9
84.6
33.2
Major BPS
84.4
0.85
1
84
34.5
Major PPT
98.8
1.1
0.5
95.2
16.3
Minor 5ss
39.2
-1.2
2.8
51.8
39
Minor BPS
71.2
0.66
1.5
82.45
31.9

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153