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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32386587_32387798_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32386587 - 32387798
Intron Length:
1212

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAC|GTAAGTTAA
5'SS Class:
strong_major
3'SS Sequence:
TAATCTTCTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTCTAATAATC
Flanking Amino Acid:
ILKILHDFYITKEEPSLILE
Intron Amino Acid Position:
607

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.71
1.2
80.2
30.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
79.5
0.66
0.9
73.2
36.7
Minor 5ss
40.9
-1
2.8
48.3
41.3
Minor BPS
51.4
0.02
1.8
69.85
35

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153