About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32389792_32391660_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32389792 - 32391660
Intron Length:
1869

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTGT
5'SS Class:
major
3'SS Sequence:
GTGTTCTGTTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTACAT
U12 Branch Point Sequence:
ACATGCATGACA
Flanking Amino Acid:
IDDPSLLKSTKPLRTIPIEV
Intron Amino Acid Position:
439

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.7
0.54
1
68.9
38.5
Major BPS
70.4
0.51
1.1
78.7
33.6
Major PPT
71.4
0.48
1
70
41.4
Minor 5ss
38.7
-1.3
3
54.8
43.5
Minor BPS
47.2
-0.2
2
58.3
41.1

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153