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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32391998_32392449_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32391998 - 32392449
Intron Length:
452

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGACTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCACTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTGTCTTTCACT
Flanking Amino Acid:
ALGKLKEAMQDFEAVLKLEP
Intron Amino Acid Position:
374

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
71.6
38.5
Major BPS
100
1.24
0.5
100
0
Major PPT
84.7
0.78
0.7
82.3
28
Minor 5ss
42.6
-0.8
3.1
59.4
45.3
Minor BPS
71.7
0.76
1.7
87.35
38.8

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153