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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32392572_32393941_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
32392572 - 32393941
Intron Length:
1370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGG
5'SS Class:
strong_major
3'SS Sequence:
TTCTTTTGCTGAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TAATCATTAATT
Flanking Amino Acid:
NRAMAYLKIQKYEEAENDCT
Intron Amino Acid Position:
333

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
75.5
40.6
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
61.1
0.25
1.7
76.1
37.8
Minor 5ss
36.8
-1.5
2.7
42.8
38.2
Minor BPS
71.8
0.76
1.5
83.78
36.5

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153