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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32394070_32395312_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32394070 - 32395312
Intron Length:
1243

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTA|GTAAGTTGC
5'SS Class:
major
3'SS Sequence:
TTAACTATAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAA
U12 Branch Point Sequence:
TTTCTCTGAACT
Flanking Amino Acid:
KQKAVIEKDLGNGYFKEGKY
Intron Amino Acid Position:
291

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77
0.64
1
68.7
37.3
Major BPS
85.7
0.89
0.8
85.9
22.5
Major PPT
68.5
0.42
1
63.3
41.5
Minor 5ss
42.4
-0.8
2.8
54.3
38.2
Minor BPS
74.8
0.86
1.3
90.4
32.6

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153