Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32395445_32396337_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

32395445 - 32396337

Intron Length:

893

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAATAAGG

5'SS Class:

major

3'SS Sequence:

AACATCTTTGCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTGAG

U12 Branch Point Sequence:

TACTGAGAAACA

Flanking Amino Acid:

AKNELKKINQALSSKESSGQ

Intron Amino Acid Position:

247

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.6

0.7

68.3

42.6

Major BPS

59.6

0.24

1.5

57.3

41.7

Major PPT

73.3

0.52

0.9

65.9

39.8

Minor 5ss

32.9

-1.9

2.9

40.9

44.9

Minor BPS

38.1

-0.9

2.6

53.05

45.1

Associated Gene:

Gene:

RPAP3

Ensembl Gene ID:

ENSAPLG00000008565

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000008959

32384899 - 32403051

18153