About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32397614_32399797_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32397614 - 32399797
Intron Length:
2184

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCCTATTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
ATTTGTTAAAAT
Flanking Amino Acid:
AEKALAEKEKGNNYFKQGNF
Intron Amino Acid Position:
140

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.3
0.72
1
70.7
33.2
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
85.6
0.8
0.8
80
30.9
Minor 5ss
30.8
-2.2
3.3
40
45.5
Minor BPS
49.9
0.07
2.1
75.14
41.9

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153