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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32399921_32400354_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32399921 - 32400354
Intron Length:
434

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTGAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TGTCCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATAAATC
Flanking Amino Acid:
DYEAWGKLDVDKILEELDKD
Intron Amino Acid Position:
99

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
0.9
66.7
40.4
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
83.8
0.76
0.8
80.8
31.1
Minor 5ss
28.3
-2.5
2.7
29
37.1
Minor BPS
48.5
-0.1
2
65.54
39.9

Associated Gene:

Gene:
RPAP3
Ensembl Gene ID:
ENSAPLG00000008565
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008959
32384899 - 32403051
18153