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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32404601_32404896_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
32404601 - 32404896
Intron Length:
296

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAGGCACC
5'SS Class:
major
3'SS Sequence:
ATCTCTTCTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACCTAT
U12 Branch Point Sequence:
CTACCTATATCT
Flanking Amino Acid:
SGGFDSATSQIVLCQNNIRQ
Intron Amino Acid Position:
126

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.9
0.71
1
69.7
41.3
Major BPS
61
0.27
1.3
58.7
39.9
Major PPT
82.5
0.73
0.8
76.6
31.5
Minor 5ss
39.3
-1.2
3.1
52.3
44.6
Minor BPS
48
-0
1.9
67.16
43.4

Associated Gene:

Gene:
ATP23
Ensembl Gene ID:
ENSAPLG00000023128
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017884
32402874 - 32409275
6402