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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32581384_32582774_R

Intron Information:

Intron Rank:
132117
Intron Class:
major
Intron Phase:
Intron Coordinates:
32581384 - 32582774
Intron Length:
1391

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATA|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTCACCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAC
U12 Branch Point Sequence:
TTCACCTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.8
0.73
0.9
82.5
29.6
Major BPS
81.3
0.78
0.8
83.4
26.1
Major PPT
82.3
0.73
0.8
75.9
32.5
Minor 5ss
39.3
-1.2
2.9
53
39
Minor BPS
67.6
0.55
1.7
76.4
40.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018327
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023693
32565353 - 32584627
19275