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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32700882_32703796_R

Intron Information:

Intron Rank:
18
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32700882 - 32703796
Intron Length:
2915

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGCTATCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TACACAT
U12 Branch Point Sequence:
GTTTCTGTACTT
Flanking Amino Acid:
SSIISNSTFMGTFGKPLWRP
Intron Amino Acid Position:
966

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80
0.71
1
74.9
36.3
Major BPS
69.9
0.49
1
75.2
29.8
Major PPT
80.5
0.69
0.9
77.1
36.8
Minor 5ss
51.5
0.05
2.3
61.4
43.6
Minor BPS
50.2
0.08
2.2
75.88
41.7

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040710
32700637 - 32744562
43926
ENSAPLT00000025094
32700637 - 32743332
42696
ENSAPLT00000008581
32700637 - 32739116
38480