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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32704073_32704153_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32704073 - 32704153
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGTTGG
5'SS Class:
strong_major
3'SS Sequence:
TCATCTTCTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAA
U12 Branch Point Sequence:
TCTTTATAAAAA
Flanking Amino Acid:
GSEAFEACSTSCSPDQRTVN
Intron Amino Acid Position:
874

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.8
0.8
0.9
72.5
39.9
Major BPS
78.6
0.71
1
78.6
31
Major PPT
79
0.65
0.8
77.6
30.9
Minor 5ss
41.3
-1
2.8
49.6
41
Minor BPS
48.9
-0
2
65.08
41.3

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000008581
32700637 - 32739116
38480
ENSAPLT00000040710
32700637 - 32744562
43926
ENSAPLT00000025094
32700637 - 32743332
42696