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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_32704298_32705338_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
32704298 - 32705338
Intron Length:
1041

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTATATTTTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAA
U12 Branch Point Sequence:
TGTCAATTATAT
Flanking Amino Acid:
GYFLQQRDSNGICHLDNGSE
Intron Amino Acid Position:
826

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.7
0.93
0.8
83.5
35
Major BPS
70.8
0.52
1
70.6
31.6
Major PPT
75.4
0.57
1.1
79.7
37.5
Minor 5ss
39.5
-1.2
2.8
48.4
41.7
Minor BPS
44.8
-0.3
2
66.54
42.9

Associated Gene:

Gene:
LRIG3
Ensembl Gene ID:
ENSAPLG00000008222
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000040710
32700637 - 32744562
43926
ENSAPLT00000025094
32700637 - 32743332
42696
ENSAPLT00000008581
32700637 - 32739116
38480